2025

Bappaditya Roy and Natsuhiko Yoshinaga
" Estimation of spatial and time scales of collective behaviours of active matters through learning hydrodynamic equations from particle dynamics"
submitted, arXiv

Uyen Tu Lieu and Natsuhiko Yoshinaga
"Dynamic control of self-assembly of quasicrystalline structures through reinforcement learning"
Soft Matter, 21, 514-525 (2025) arXiv

2024

Tatsuro Kai, Takahiro Abe, Natsuhiko Yoshinaga, Shuichi Nakamura, Seishi Kudo, Shoichi Toyabe
"Collective gradient sensing by swimming bacteria without clustering"
Physical Review Research, 6, L032061 (2024), bioRxiv

Satoshi Iihama, Yuya Koike, Shigemi Mizukami, Natsuhiko Yoshinaga
"Universal scaling between wave speed and size enables nanoscale high-performance reservoir computing based on propagating spin-waves"
npj Spintronics, 2, 5 (2024), arXiv

Research News "Giant Leap Towards Neuromorphic Devices: High-performance Spin-wave Reservoir Computing"
AIMR: https://www.wpi-aimr.tohoku.ac.jp/en/achievements/press/2024/20240304_001762.html
TU: https://www.tohoku.ac.jp/en/press/giant_leap_towards_neuromorphic_devices.html
EurekAlert!: https://www.eurekalert.org/news-releases/1036747
AlphaGalileo: https://www.alphagalileo.org/en-gb/Item-Display/ItemId/243463?returnurl=https://www.alphagalileo.org/en-gb/Item-Display/ItemId/243463
Asia Research News: https://www.asiaresearchnews.com/content/giant-leap-towards-neuromorphic-devices-high-performance-spin-wave-reservoir-computing

2023

Saki Nishikawa, Gaku Sato, Sakura Takada, Shunshi Kohyama, Gen Hondac, Miho Yanagisawa, Yutaka Hori, Nobuhide Doi, Natsuhiko Yoshinaga, Kei Fujiwara
"Multimolecular Competition Effect as a Modulator of Protein Localization and Biochemical Networks in Cell-size Space"
Advanced Science, 11, 2308030 (2024) open access

Yueyuan Gao and Natsuhiko Yoshinaga
"Inverse problems of inhomogeneous fracture toughness using phase-field models"
Physica D, 448, 133734 (2023) open access

2022

Natsuhiko Yoshinagaand Satoru Tokuda
"Bayesian Modelling of Pattern Formation from One Snapshot of Pattern"
Physical Review E, 106, 065301 (2022) open access

Uyen Tu Lieu and Natsuhiko Yoshinaga
"Formation and Fluctuation of Two-dimensional Dodecagonal Quasicrystal"
Soft Matter, 18, 7497-7509 (2022) arXiv

Sakura Takada, Natsuhiko Yoshinaga, Nobuhide Doi, and Kei Fujiwara
"Controlling periodicity of a reaction-diffusion wave in artificial cells by a two-way energy supplier"
ACS Nano, 16, 16853-16861 (2022)

Miho Yanagisawa, Chiho Watanabe, Natsuhiko Yoshinaga, and Kei Fujiwara
"Cell-size space regulates behaviors of confined polymers: From Nano- and Micromaterial Science to Biology"
Langmuir, 38, 11811-11827 (2022)

Sakura Takada, Natsuhiko Yoshinaga, Nobuhide Doi, and Kei Fujiwara
"Mode selection mechanism in traveling and standing waves revealed by Min wave reconstituted in artificial cells"
Science Advances, 8, eabm8460 (2022) bioRxiv

Uyen Tu Lieu and Natsuhiko Yoshinaga
"Inverse design of two-dimensional structure by self-assembly of patchy particles"
Journal of Chemcial Physics, 156, 054901 (2022) arXiv

2020

Uyen Tu Lieu and Natsuhiko Yoshinaga
"Topological defects of dipole patchy particles on a spherical surface"
Soft Matter, 16, 7667-7675 (2020) arXiv

Shunshi Kohyama, Kei Fujiwara, Natsuhiko Yoshinaga, Nobuhide Doi
"Conformational equilibrium of MinE regulates the allowable concentration ranges of a protein wave for cell division"
Nanoscale, 12, 11960-11970 (2020)

Akira Kamimaki, Satoshi Iihama, Kazuya Suzuki, Natsuhiko Yoshinaga, and Shigemi Mizukami
"Parametric amplification of magnons in synthetic antiferromagnets"
Physical Review Applied, 13, 044036 (2020)

2019

Shunshi Kohyama, Natsuhiko Yoshinaga, Miho Yanagisawa, Kei Fujiwara, Nobuhide Doi
"Cell-sized confinement controls generation and stability of a protein wave for spatiotemporal regulation in cells"
eLife, 8, e44591 (2019) bioRxiv

Protocol: Kohyama, S., Fujiwara, K., Yoshinaga, N. and Doi, N.
"Self-organization Assay for Min Proteins of Escherichia coli in Micro-droplets Covered with Lipids."
Bio-protocol10(6): e3561 (2020).

Rafael Monteiro and Natsuhiko Yoshinaga
"The Swift-Hohenberg Equation under directional-quenching: finding heteroclinic connections using spatial and spectral decompositions"
Archive for Rational Mechanics and Analysis, 235, 405-470 (2020)

Natsuhiko Yoshinaga,
"Self-propulsion of an active polar drop"
Journal of Chemical Physics, 150, 184904 (2019) arXiv, PDF

Natsuhiko Yoshinagaand Shunsuke Yabunaka
"Theory of active particles and drops driven by chemical reactions: the role of hydrodynamics on self-propulsion and collective behaviours"
"Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics"edited by Satoshi Nakata, Veronique Pimienta, Istvan Lagzi, Hiroyuki Kitahata, Nobuhiko J Suematsu

2018

Hiroyuki Kitahata, Natsuhiko Yoshinaga
"Effective diffusion coefficient including the Marangoni effect"
Journal of Chemical Physics, 148, 134906 (2018) arXiv

Kyongwan Kim, Natsuhiko Yoshinaga, Sanjib Bhattacharyya, Hikaru Nakazawa, Mitsuo Umetsu, and Winfried Teizer
"Large-scale chirality in an active layer of microtubules and kinesin motor proteins"
Soft Matter, 14, 3221-3231 (2018) arXiv

Natsuhiko Yoshinaga, Tanniemola B. Liverpool
"From hydrodynamic lubrication to many-body interactions in dense suspensions of active swimmers"
European Physical Journal E, 41, 76 (2018) arXivor Springer Nature Sharing

2017

Natsuhiko Yoshinaga, Tanniemola B. Liverpool
"Hydrodynamic interactions in dense active suspensions:from polar order to dynamical clusters"
Physical Review E Rapid Communications, 96, 020603(R)(2017). arXiv

Natsuhiko Yoshinaga,
"Simple models of self-propelled colloids and liquid drops: from individual motion to collective behaviors"
Journal of the Physical Society of Japan Special Topics "Recent Progress in Active Matter", 86, 101009 (2017)

2016

Shunsuke Yabunaka, Natsuhiko Yoshinaga
"Collision between chemically-driven self-propelled drops"
Journal of Fluid Mechanics, 809, 205-233 (2016) arXiv

2015

Yuki Koyano, Natsuhiko Yoshinaga, Hiroyuki Kitahata
"General Criteria for Determining Rotation or Oscillation in a Two-dimensional Axisymmetric System"
Journal of Chemical Physics , 143, 014117 (2015) arXiv

Tomohiro Matsushita*, Atsushi Kubota, Naohisa Happo, Kazuto Akagi, Natsuhiko Yoshinaga, and Kouichi Hayashi
"Fast Calculation Algorithm Using Barton’s Method for Reconstructing Three-Dimensional Atomic Images from X-ray Fluorescence Holograms"
Zeitschrift fur Physikalische Chemie,230, 449-455 (2016)

2014

Natsuhiko Yoshinaga,
"Spontaneous motion and deformation of a self-propelled droplet"
Physical Review E, 89, 012913 (2014) arXiv
Supplementary information

2013

Hiroyuki Kitahata, Natsuhiko Yoshinaga, Ken H. Nagai, Yutaka Sumino,
"Dynamics of Droplets"

in, Pattern Formations and Oscillatory Phenomenaedited by Shuichi Kinoshita

Ken H. Nagai, Fumi Takabatake, Yutaka Sumino, Hiroyuki Kitahata, Masatoshi Ichikawa, and Natsuhiko Yoshinaga,
"Rotational motion of a droplet induced by interfacial tension"
Physical Review E, 87, 013009 (2013) arXiv

2012

Natsuhiko Yoshinaga, Ken H. Nagai, Yutaka Sumino, Hiroyuki Kitahata
"Drift instability in the motion of a fluid droplet with a chemically reactive surface driven by Marangoni flow"
Physical Review E, 86, 016108 (2012) arXiv
movies are available here

Natsuhiko Yoshinagaand Philippe Marcq
"Contraction of cross-linked actomyosin bundles"
Physical Biology, 9, 046004 (2012) arXiv

Shunsuke Yabunaka, Takao Ohta, and Natsuhiko Yoshinaga
"Self-propelled motion of a fluid droplet under chemical reaction"
Journal of Chemical Physics, 136, 074904 (2012) arXiv

Hiroyuki Kitahata, Natsuhiko Yoshinaga, Ken H. Nagai, Yutaka Sumino
"Spontaneous Motion of a Belousov-Zhabotinsky Reaction Droplet Coupled with a Spiral Wave"
Chemistry Letters , 41, 1052-1054 (2012) arXiv
movies are available here

2011

Hiroyuki Kitahata, Natsuhiko Yoshinaga, Ken H. Nagai, and Yutaka Sumino
"Spontaneous motion of a droplet coupled with a chemical wave"
Physical Review E Rapid Communication, 84, 015101(R) (2011) arXiv
selected by PRE Kaleidoscope Images: July 2011
movies are available here

Philippe Marcq, Natsuhiko Yoshinaga, and Jacques Prost
"Rigidity sensing explained by active matter theory"
Biophysical Journal, 101, L33-L35 (2011) arXiv

2010

Hong-Ren Jiang, Natsuhiko Yoshinaga, and Masaki Sano
"Active Motion of Janus Particle by Self-thermophoresis in Defocused Laser Beam"
Physical Review Letters, 105, 268302 (2010) arXiv

Editor's suggestion and Viewpoint in Physics, 3, 108 (2010)Debut of a hot “fantastic voyager”
movies are available here

Natsuhiko Yoshinaga, Jean-Francois Joanny, Jacques Prost and Pilippe Marcq
"Polarity patterns of stress fibers"
Physical Review Letters, 105, 238103 (2010) arXiv

2009

Takahiro Sakaue and Natsuhiko Yoshinaga
"Dynamics of Polymer Decompression: Expansion, Unfolding and Ejection"
Physical Review Letters, 102, 148302 (2009). arXiv

Hong-Ren Jiang, Hirofumi Wada, Natsuhiko Yoshinaga, and Masaki Sano
"Manipulation of Colloids by Nonequilibrium Depletion Force in Temperature Gradient"
Physical Review Letters, 102, 208301 (2009). arXiv

2008

Natsuhiko Yoshinaga, E.I. Kats and A. Halperin
"On the Adsorption of Two-State Polymers"
Macromolecules, 41, 7744-7751 (2008) arXiv

Natsuhiko Yoshinaga
"Folding and unfolding transition in a single semiflexible polymer "
Physical Review E, 77, 061805 (2008).arXiv

2007

Natsuhiko Yoshinagaand Kenichi Yoshikawa
"Core-shell structures in single flexible-semiflexible block copolymers: Finding the free energy minimum for the folding transition"
Journal of Chemical Physics, 127, 044902 (2007).

N. Yoshinaga, D. J. Bicout, E.I. Kats and A. Halperin
"Dynamic Core Shell Structures in Two State Models of Neutral Water Soluble Polymersr"
Macromolecules, 40(6), 2201-2209 (2007)

2006

N. Yoshinaga
"Transition kinetics of a single semiflexible polymer"
Progress of Theoretical Physics Supplement, 161, 397-402 (2006).

2005

N. Yoshinaga, K. Yoshikawa and T. Ohta
"Different pathways in mechanical unfolding/folding cycle of a single semiflexible polymer"
European Physical Journal E, 17, 485 (2005).

K. Yoshikawa and N. Yoshinaga
"Novel scenario on the folding transition of a single chain"
Journal of Physics: Condensed Matter, 17, S2817-S2823 (2005).

2002

N. Yoshinaga, K. Yoshikawa and S. Kidoaki
"Multiscaling in a Long Semiflexible Polymer Chain in Two Dimension"
Journal of Chemical Physics, 116, 9926 - 9929 (2002).

2001

N. Yoshinaga, T. Akitaya and K. Yoshikawa
“Intercalating Fluorescence Dye YOYO-1 Prevents the Folding Transition in Giant Duplex DNA”
Biochemical and Biophysical Research Communications, 286, 264-267, (2001).